Long-term life history predicts current gut microbiome in a population-based cohort study
Si J,Vázquez-Castellanos J F, Gregory A C, Decommer L, Rymenans L, Proost S, Centelles Lodeiro J, Weger M, Notdurfter M, Leitner C, Santer P, Rungger G, Willeit J, Willeit P, Pechlaner R, Grabherr F, Kiechl S, Tilg H& Raes J
Nature Aging 2022 October 14.

Genome-wide associations of human gut microbiome variation and implications for causal inference analyses
Hughes DA , Bacigalupe R, Wang J, Rühlemann MC, Tito RY, Falony G, Joossens M, Vieira-Silva S, Henckaerts L, Rymenans L, Verspecht C, Ring S, Franke A, Wade KH, Timpson NJ, Raes J
Nature Microbiology 2020 June 22.

Statin therapy is associated with lower prevalence of gut microbiota dysbiosis
Vieira-Silva S, Falony G, Belda E, Nielsen T, Aron-Wisnewsky J, Chakaroun R, Forslund SK, Assmann K, Valles-Colomer M, Nguyen TTD,Proost S, Prifti E, ..., MetaCardis Consortium, ..., Clément K and Raes J
Nature 2020 May 06.

Quantitative microbiome profiling disentangles inflammation-and bile duct obstruction-associated microbiota alterations across PSC/IBD diagnoses
Vieira-Silva S, Sabino J, Valles-Colomer M, Falony G, Kathagen G, Caenepeel C, Cleynen I, van der Merwe S, Vermeire S, Raes J.
Nat Microbiology 2019 November 4.

The neuroactive potential of the human gut microbiota in quality of life and depression
Valles-Colomer M, Falony G, Darzi Y, Tigchelaar EF, Wang J, Tito RY, Schiweck C, Kurilshikov A, Joossens M, Wijmenga C, Claes S, Van Oudenhove L, Zhernakova A, Vieira-Silva S, Raes J
Nature Microbiology 2019 February 4.

Quantitative microbiome profiling links gut community variation to microbial load
Vandeputte D, Kathagen G, D'hoe K, Vieira-Silva S, Valles-Colomer M, Sabino J, Wang J, Tito RY, De Commer L, Darzi Y, Vermeire S, Falony G, Raes J
Nature 2017 Nov 23. Vol. 551, Issue 7681

Population-level analysis of gut microbiome variation
Falony G*, Joossens M*, Vieira-Silva S*, Wang J*, Darzi Y, Faust K, Kurilshikov A, Bonder MJ, Valles-Colomer M, Vandeputte D, Tito RY, Chaffron S, Rymenans L, Verspecht C, De Sutter L, Lima-Mendez G, D'hoe K, Jonckheere K, Homola D, Garcia R, Tigchelaar EF, Eeckhaudt L, Fu J, Henckaerts L, Zhernakova A, Wijmenga C, Raes J
Science 2016 April 29. Vol. 352, Issue 6285

Disentangling the effects of type 2 diabetes and metformin on the human gut microbiota.
Forslund K*, Hildebrand F*, Nielsen T*, Falony G*, Le Chatelier E*, Sunagawa S, Prifti E, Vieira-Silva S, Gudmundsdottir V, Pedersen H K, Arumugam A, Kristiansen K, Voigt A Y, Vestergaard H, Hercog R, Costea P I, Kultima J R, Li J, Jørgensen T, Levenez F, Doré J, MetaHIT consortium, Nielsen H B, Brunak S, Raes J, Hansen T, Wang J, Ehrlich S D, Bork P and Pedersen O
Nature, 528, 262-266, 2015

Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates.
Vandeputte D*, Falony G*, Vieira-Silva S, Tito RY, Joossens M and Raes J
Gut, pii: gutjnl-2015-309618, 2015

Metagenomics meets time series: Unraveling microbial community dynamics.
Faust K*, Lahti L*, Gonze D, De Vos W and Raes J.
Current Opinion in Microbiology 25, 56-66, 2015

Determinants of community structure in the global plankton interactome
Lima-Mendez G, Faust, K, Henri, N, [53 authors], Karsenti, E, Bowler, C, De Vargas and Raes J
Science 2015 May 22. Vol. 348 Issue 6237

Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice
Hildebrand F*, Nguyen Thi Loan A*, Brinkman B, Garcia Yunta R, Cauwe B, Vandenabeele P, Liston A* Raes J*
Genome Biology, 14, R4, 2013

Richness of human gut microbiome correlates with metabolic markers.
Le Chatelier E, [39 authors, among which Hildebrand F, Falony, G and Raes J] and Pedersen, O
Nature, 500, 541-6, 2013

A metagenome-wide association study of gut microbiota in type 2 diabetes
Qin J, Li y, Cai Z, Li S, Zhu J, Zhang F, Liang S, Zhang W, Guan Y, Shen D, Peng Y, Zhang D, Jie Z, Wu W, Qin Y, Xue W, Li J, Han L, Lu D, Wu P, Dai Y, Sun X, Li Z, Tang A, Zhong S, Li X, Chen W, Xu R, Wang M, Feng Q, Gong M, Yu J, Zhang Y, Zhang m, Hansen T, Sanchez G, Raes J, Falony G, Okuda S, Almeida M, Lechatelier E, Renault P, Pons N, Batto J, Zhang Z, Chen H, Yang R, Zheng W, Li T, Yang h, Wang K, Ehrlich S, Nielsen R, Pedersen O, Kristiansen K, Wang J
Nature, 490, 55-60, 2012

Microbial interactions: from networks to models
Faust K, Raes J
Nature Reviews Microbiology, 10, 538-50, 2012

Enterotypes of the human gut microbiome
Arumugam M*, Raes J*, [40 authors], Bork P
Nature, 473, 174-80, 2011

Structure, function and diversity of the healthy human microbiome
The Human Microbiome Project consortium [incl. Raes J, Faust, K]
Nature, 486, 207-14, 2012

A human gut microbial gene catalog established by deep metagenomic sequencing
Qin J*, Li R*, Raes J, [46 authors], Wang J
Nature, 464, 59-65, 2010